Selected Publications

Jackson HW, Fischer JR, Zanotelli VRT, Ali HR, Mechera R, Soysal SD, Moch H, Muenst S, Varga Z, Weber WP, Bodenmiller B: The single-cell pathology landscape of breast cancer. Nature 2020 Feb; 578(7796):615-620.

Wagner J, Rapsomaniki MA, Chevrier S, Anzeneder T, Langwieder C, Dykgers A, Rees M, Ramaswamy A, Muenst S, Soysal SD, Jacobs A, Windhager J, Silina K, van den Broek M, Dedes KJ, Rodríguez Martínez M, Weber WP, Bodenmiller B: A single-cell atlas of the tumor and immune ecosystem of human breast cancer. Cell 2019 May 16;177(5):1330-1345.e18.

Damond N, Engler S, Zanotelli VRT, Schapiro D, Wasserfall CH, Kusmartseva I, Nick HS, Thorel F, Herrera PL, Atkinson MA, Bodenmiller B: A map of human type I diabetes progression by imaging mass cytometry. Cell Metabolism 29(3): 755-768.E5

Chevrier S, Crowell HL, Zanotelli VRT, Engler S, Robinson MD, Bodenmiller B: Compensation of signal spillover in suspension and imaging mass cytometry. Cell Systems 6(5), 612-620 (2018).

Schulz D, Zanotelli VRT, Fischer JR, Schapiro D, Engler S, Lun XK, Jackson, HW, Bodenmiller B: Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry. Cell Systems 6(1), 25 - 36 (2018).

Schapiro D, Jackson HW, Raghuraman S, Fischer JR, Zanotelli VRT, Schulz D, Giesen C, Catena R, Varga Z, Bodenmiller B: HistoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data. Nature Methods 14, 873–876 (2017).

Chevrier S, Levine JH, Zanotelli VRT, Silina K, Schulz D, Bacac M, Ries CH, Ailles L, Jewett MAS, Moch H, van den Broek M, Beisel C, Stadler MB, Gedye C, Reis B, Pe'er D, Bodenmiller B: An immune atlas of clear cell renal cell carcinom. Cell 169(4), 736 - 749 (2017).

Lun XK, Zanotelli VRT, Wade JW, Schapiro D, Tognetti M, Dobberstein N, Bodenmiller B: Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry. Nature Biotechnology 35, 164–172 (2017).

Giesen C, Wang HAO, Schapiro D, Zivanovic N, Jacobs A, Hattendorf B, Schueffler PJ, Grolimund D, Buhmann JM, Brandt S, Varva Z, Wild PJ, Guenther D, Bodenmiller B: Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry. Nature Methods 11, 417–422 (2014).